Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs45564136 chr6:43251880 C/G 1.64E-7 474 32.03 28.07 23.2 KM Plot
PRAD rs4560562 chr5:171733971 C/T 1.29E-5 489 29.95 33.47 28.43 KM Plot
PRAD rs4598328 chr9:138674812 C/T 1.97E-5 473 31.63 28.7 18.1 KM Plot
PRAD rs4603933 chr3:151103070 T/G 3.06E-6 489 17.9 28.65 31.43 KM Plot
PRAD rs4606121 chr9:72878030 T/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs4610818 chr9:72956558 T/G 1.82E-5 491 30.8 31.42 22.45 KM Plot
PRAD rs4621877 chr9:72871082 C/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs4632189 chr17:58048915 A/C 0 482 30.8 31.13 4.87 KM Plot
PRAD rs4637289 chr3:133458497 A/G 5.83E-5 491 31 30.93 35.33 KM Plot
PRAD rs4658818 chr1:242000426 T/C 8.68E-5 491 30.8 31.33 29.13 KM Plot
PRAD rs4663857 chr2:239089937 A/G 0 485 30.8 32.73 5.7 KM Plot
PRAD rs4663861 chr2:239105203 C/T 6.29E-10 480 31.43 28.93 30.45 KM Plot
PRAD rs4663862 chr2:239108850 T/A 6.72E-10 480 31.43 28.93 30.45 KM Plot
PRAD rs4673660 chr2:200915395 C/T 0.000147 494 33.47 31.3 30.53 KM Plot
PRAD rs4676091 chr2:107458807 C/T 0.000136 490 30.73 31.13 32.63 KM Plot